Cherry SNP DataBase
SNP information
| Name |
Pav_sc0000044.1_539549K |
| Chr |
PAV_r1.0chr7 |
| Pos (Chr) |
13804199 |
| PAV_r1.0 |
Pav_sc0000044.1 |
| Pos (PAV_r1.0) |
539549 |
| REF |
G |
| ALT |
T |
| SSR motif |
|
| Gene |
Name |
|
| Annotation |
|
| snpEff |
Effect |
intergenic_region |
| Impact |
MODIFIER |
| Codon |
n.539549G>T |
| Amino Acid |
|
| PCR |
Forward primer |
GAATCAACTTGCATTTCGCA |
| Reverse primer |
ATTGTACCCACCTCACCCAA |
| Product size |
246 |
| Enzymes for CAPS |
AfaI |
| Exp. fragment size (REF) |
158,83,5 |
| Exp. fragment size (ALT) |
241,5 |
| References |
|
Germplasm List
| Benikirari |
Benisayaka |
Benishuho |
Benitemari |
Beniyutaka |
Nanyo |
Satonishiki |
REF/ALT |
REF/ALT |
REF/ALT |
REF/ALT |
ALT/ALT |
REF/ALT |
REF/ALT |
| Top |