Cherry SNP DataBase
SNP information
| Name |
Pav_sc0000293.1_300016R |
| Chr |
PAV_r1.0chr3 |
| Pos (Chr) |
710828 |
| PAV_r1.0 |
Pav_sc0000293.1 |
| Pos (PAV_r1.0) |
300016 |
| REF |
A |
| ALT |
G |
| SSR motif |
|
| Gene |
Name |
|
| Annotation |
|
| snpEff |
Effect |
intergenic_region |
| Impact |
MODIFIER |
| Codon |
n.300016A>G |
| Amino Acid |
|
| PCR |
Forward primer |
TATTGCTGCTGATGGCTGAG |
| Reverse primer |
TTGGCAATGAACAGCTGAAG |
| Product size |
341 |
| Enzymes for CAPS |
MboI |
| Exp. fragment size (REF) |
181,160 |
| Exp. fragment size (ALT) |
163,18,160 |
| References |
|
Germplasm List
| Benikirari |
Benisayaka |
Benishuho |
Benitemari |
Beniyutaka |
Nanyo |
Satonishiki |
REF/REF |
REF/REF |
ALT/ALT |
REF/ALT |
REF/ALT |
REF/ALT |
REF/ALT |
| Top |