Cherry SNP DataBase

SNP information

Name Pav_sc0000383.1_156744R
Chr PAV_r1.0chr5
Pos (Chr) 15770713
PAV_r1.0 Pav_sc0000383.1
Pos (PAV_r1.0) 156744
REF G
ALT A
SSR motif
Gene Name Pav_sc0000383.1_g310.1.mk
Annotation PREDICTED: homeobox protein 2
snpEff Effect missense_variant
Impact MODERATE
Codon c.587C>T
Amino Acid p.Ala196Val
PCR Forward primer TCCTTCCCTCAATTGGTCAC
Reverse primer ATCACGACGGAGGAGAATTG
Product size 301
Enzymes for CAPS HhaI
Exp. fragment size (REF) 221,80
Exp. fragment size (ALT) 301
References
Germplasm List
Benikirari Benisayaka Benishuho Benitemari Beniyutaka Nanyo Satonishiki
REF/ALT REF/ALT REF/REF REF/ALT REF/REF ALT/ALT REF/ALT


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