Cherry SNP DataBase
SNP information
| Name |
Pav_sc0000426.1_2460M |
| Chr |
PAV_r1.0chr8 |
| Pos (Chr) |
5485169 |
| PAV_r1.0 |
Pav_sc0000426.1 |
| Pos (PAV_r1.0) |
2460 |
| REF |
A |
| ALT |
C |
| SSR motif |
|
| Gene |
Name |
|
| Annotation |
|
| snpEff |
Effect |
intergenic_region |
| Impact |
MODIFIER |
| Codon |
n.2460A>C |
| Amino Acid |
|
| PCR |
Forward primer |
AGTTAAGGCAGCAGCAATGG |
| Reverse primer |
CACCTGTGCATCCATACCCT |
| Product size |
206 |
| Enzymes for CAPS |
AluI | BglII | MboI |
| Exp. fragment size (REF) |
110,96 | 74,132 | 74,132 |
| Exp. fragment size (ALT) |
75,35,96 | 206 | 206 |
| References |
|
Germplasm List
| Benikirari |
Benisayaka |
Benishuho |
Benitemari |
Beniyutaka |
Nanyo |
Satonishiki |
ALT/ALT |
REF/REF |
REF/REF |
REF/REF |
REF/ALT |
ALT/ALT |
REF/REF |
| Top |