Cherry SNP DataBase

SNP information

Name Pav_sc0000488.1_295454M
Chr PAV_r1.0chr3
Pos (Chr) 14253238
PAV_r1.0 Pav_sc0000488.1
Pos (PAV_r1.0) 295454
REF C
ALT A
SSR motif
Gene Name Pav_sc0000488.1_g640.1.mk
Annotation PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3
snpEff Effect intron_variant
Impact MODIFIER
Codon c.607-65G>T
Amino Acid
PCR Forward primer AAGTGGGTTGTGAATCCCAG
Reverse primer TGGTCAATCTTTTGTGTTGGG
Product size 295
Enzymes for CAPS AluI | HindIII
Exp. fragment size (REF) 130,24,141 | 152,143
Exp. fragment size (ALT) 130,165 | 295
References
Germplasm List
Benikirari Benisayaka Benishuho Benitemari Beniyutaka Nanyo Satonishiki
REF/REF REF/ALT REF/REF REF/REF REF/REF -/- REF/REF


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