Cherry SNP DataBase

SNP information

Name Pav_sc0000496.1_297778W
Chr PAV_r1.0chr7
Pos (Chr) 7028592
PAV_r1.0 Pav_sc0000496.1
Pos (PAV_r1.0) 297778
REF T
ALT A
SSR motif
Gene Name Pav_sc0000496.1_g570.1.br
Annotation
snpEff Effect missense_variant
Impact MODERATE
Codon c.379A>T
Amino Acid p.Ser127Cys
PCR Forward primer CTCGATCGTCTTCGTGTTCA
Reverse primer GAATGGTCCCACCAATCAAG
Product size 317
Enzymes for CAPS AluI
Exp. fragment size (REF) 130,36,131,20
Exp. fragment size (ALT) 166,131,20
References
Germplasm List
Benikirari Benisayaka Benishuho Benitemari Beniyutaka Nanyo Satonishiki
REF/REF REF/ALT REF/ALT REF/ALT REF/REF REF/REF REF/ALT


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