Cherry SNP DataBase

SNP information

Name Pav_sc0000506.1_103717Y
Chr PAV_r1.0chr4
Pos (Chr) 4210594
PAV_r1.0 Pav_sc0000506.1
Pos (PAV_r1.0) 103717
REF C
ALT T
SSR motif
Gene Name Pav_sc0000506.1_g150.1.mk
Annotation PREDICTED: uncharacterized protein LOC103324905
snpEff Effect synonymous_variant
Impact LOW
Codon c.1323C>T
Amino Acid p.Ala441Ala
PCR Forward primer GGGAGTTGACGGACTTTATCC
Reverse primer GAACATCCAACAAATGCACCT
Product size 333
Enzymes for CAPS AluI | MspI
Exp. fragment size (REF) 84,45,49,155 | 142,191
Exp. fragment size (ALT) 84,45,12,37,155 | 333
References
Germplasm List
Benikirari Benisayaka Benishuho Benitemari Beniyutaka Nanyo Satonishiki
REF/REF REF/ALT REF/ALT REF/REF REF/REF REF/ALT REF/ALT


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