Cherry SNP DataBase
SNP information
| Name |
Pav_sc0000584.1_139678M |
| Chr |
PAV_r1.0chr4 |
| Pos (Chr) |
12175874 |
| PAV_r1.0 |
Pav_sc0000584.1 |
| Pos (PAV_r1.0) |
139678 |
| REF |
C |
| ALT |
A |
| SSR motif |
|
| Gene |
Name |
|
| Annotation |
|
| snpEff |
Effect |
intergenic_region |
| Impact |
MODIFIER |
| Codon |
n.139678C>A |
| Amino Acid |
|
| PCR |
Forward primer |
ATCGGTTCAGCATGAAAAGG |
| Reverse primer |
ATTTGGTTTTGGGGTTCACA |
| Product size |
273 |
| Enzymes for CAPS |
EcoRI |
| Exp. fragment size (REF) |
173,100 |
| Exp. fragment size (ALT) |
273 |
| References |
|
Germplasm List
| Benikirari |
Benisayaka |
Benishuho |
Benitemari |
Beniyutaka |
Nanyo |
Satonishiki |
REF/REF |
REF/ALT |
ALT/ALT |
REF/ALT |
REF/ALT |
ALT/ALT |
REF/ALT |
| Top |