Cherry SNP DataBase

SNP information

Name Pav_sc0001623.1_5305Y
Chr PAV_r1.0chr1
Pos (Chr) 34516406
PAV_r1.0 Pav_sc0001623.1
Pos (PAV_r1.0) 5305
REF T
ALT C
SSR motif
Gene Name Pav_sc0001623.1_g030.1.mk
Annotation PREDICTED: zeaxanthin epoxidase, chloroplastic
snpEff Effect synonymous_variant
Impact LOW
Codon c.1092A>G
Amino Acid p.Ala364Ala
PCR Forward primer CAAATTTTGTGCTCCCCACT
Reverse primer TGTGGCTTCCAGAGTTTGTG
Product size 224
Enzymes for CAPS AluI
Exp. fragment size (REF) 101,123
Exp. fragment size (ALT) 224
References
Germplasm List
Benikirari Benisayaka Benishuho Benitemari Beniyutaka Nanyo Satonishiki
REF/ALT REF/ALT REF/REF REF/REF REF/REF REF/ALT REF/REF


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